Multi-task Learning in GraphStorm
In real world graphs, it is common to have multiple tasks defined on the same graph. For example, people may want to do link prediction as well as node feature reconstruction at the same time to supervise the training of a GNN model. As another example, people may want to do fraud detection on both seller and buyer nodes in a seller-product-buyer graph. To support such scenarios, GraphStorm supports multi-task learning, allowing users to define multiple training targets on different nodes and edges within a single training loop. The supported training supervisions for multi-task learning include node classification/regression, edge classification/regression, link prediction, node feature reconstruction and edge feature reconstruction.
Preparing the Training Data
You can follow the Use Your Own Data tutorial to prepare your graph data for multi-task learning. You can define multiple tasks on the same node type or edge type as shown in the JSON example below.
{
"version": "gconstruct-v0.1",
"nodes": [
......
{
"node_type": "paper",
"format": {
"name": "parquet"
},
"files": [
"/tmp/acm_raw/nodes/paper.parquet"
],
"node_id_col": "node_id",
"features": [
{
"feature_col": "feat",
"feature_name": "feat"
}
],
"labels": [
{
"label_col": "label_class",
"task_type": "classification",
"split_pct": [0.8, 0.1, 0.1],
"mask_field_names": ["train_mask_class",
"val_mask_class",
"test_mask_class"]
},
{
"label_col": "label_reg",
"task_type": "regression",
"split_pct": [0.8, 0.1, 0.1],
"mask_field_names": ["train_mask_reg",
"val_mask_reg",
"test_mask_reg"]
}
]
},
......
],
......
}
In the above configuration, we define two tasks for the paper nodes. One is a classification task with the label name of label_class and the train/validation/test mask fields as train_mask_class, val_mask_class and test_mask_class, respectively. Another one is a regression task with label name of label_reg and the train/validation/test mask fields as train_mask_reg, val_mask_reg and test_mask_reg, respectively.
You can also define multiple tasks on different node and edge types as shown in the JSON example below.
{
"version": "gconstruct-v0.1",
"nodes": [
......
{
"node_type": "paper",
"format": {
"name": "parquet"
},
"files": [
"/tmp/acm_raw/nodes/paper.parquet"
],
"node_id_col": "node_id",
"features": [
{
"feature_col": "feat",
"feature_name": "feat"
}
],
"labels": [
{
"label_col": "label",
"task_type": "classification",
"split_pct": [0.8, 0.1, 0.1],
"mask_field_names": ["train_mask_class",
"val_mask_class",
"test_mask_class"]
}
]
},
......
],
"edges": [
......
{
"relation": [
"paper",
"citing",
"paper"
],
"format": {
"name": "parquet"
},
"files": [
"/tmp/acm_raw/edges/paper_citing_paper.parquet"
],
"source_id_col": "source_id",
"dest_id_col": "dest_id",
"labels": [
{
"task_type": "link_prediction",
"split_pct": [0.8, 0.1, 0.1],
"mask_field_names": ["train_mask_lp",
"val_mask_lp",
"test_mask_lp"]
}
]
},
......
]
}
In the above configuration, we define one task for the paper node and one task for the paper,citing,paper edge. The node classification task will take the label name of label_class and the train/validation/test mask fields as train_mask_class, val_mask_class and test_mask_class, respectively. The link prediction task will take the train/validation/test mask fields as train_mask_lp, val_mask_lp and test_mask_lp, respectively.
Construct Graph
You can follow the instructions in Run graph construction to use the GraphStorm construction tool for creating partitioned graph data. Please ensure you customize the command line arguments such as –conf-file, –output-dir, –graph-name to your specific values. For large graphs you can use GSProcessing to prepare your data. For specific instructions when using GSProcessing for multi-task training see Creating a graph for multi-task training.
Run Multi-task Learning Training
Running a multi-task learning training task is similar to running other GraphStorm built-in tasks as detailed in Launch Training. The main difference is to define multiple training targets in the YAML configuration file.
Define Multi-task for training
You can specify multiple training tasks for a training job by providing the multi_task_learning configurations in the YAML file. The following configuration defines two training tasks, one for node classification and one for edge classification.
---
version: 1.0
gsf:
basic:
...
...
multi_task_learning:
- node_classification:
target_ntype: "paper"
label_field: "label_class"
mask_fields:
- "train_mask_class"
- "val_mask_class"
- "test_mask_class"
num_classes: 10
task_weight: 1.0
- node_regression:
target_ntype: "paper"
label_field: "label_reg"
mask_fields:
- "train_mask_reg"
- "val_mask_reg"
- "test_mask_reg"
task_weight: 1.0
- link_prediction:
num_negative_edges: 4
num_negative_edges_eval: 100
train_negative_sampler: joint
train_etype:
- "paper,citing,paper"
mask_fields:
- "train_mask_lp"
- "val_mask_lp"
- "test_mask_lp"
task_weight: 0.5 # weight of the task
Task specific hyperparameters in multi-task learning are same as those for single task learning as detailed in Training and Inference, except that two new configs are required, i.e., mask_fields and task_weight. The mask_fields provides the specific training, validation and test masks for a task. The task_weight defines a task’s loss weight value to be multiplied with its loss value when aggregating all task losses to compute the total loss during training.
In multi-task learning, GraphStorm provides two new unsupervised training signals: 1/ node feature reconstruction (BUILTIN_TASK_RECONSTRUCT_NODE_FEAT = “reconstruct_node_feat”) and 2/ edge feature reconstruction (BUILTIN_TASK_RECONSTRUCT_EDGE_FEAT = “reconstruct_edge_feat”)
You can define a node feature reconstruction task as the following example:
---
version: 1.0
gsf:
basic:
...
...
multi_task_learning:
- node_classification:
...
- reconstruct_node_feat:
reconstruct_nfeat_name: "title"
target_ntype: "movie"
batch_size: 128
mask_fields:
- "train_mask_c0" # node classification mask 0
- "val_mask_c0"
- "test_mask_c0"
task_weight: 1.0
eval_metric:
- "mse"
In the configuration, target_ntype defines the target node type, the reconstruct node feature learning will be applied. reconstruct_nfeat_name` defines the name of the feature to be re-construct. The other configs are same as node regression tasks.
You can define an edge feature reconstruction task as the following example:
---
version: 1.0
gsf:
basic:
...
...
multi_task_learning:
- node_classification:
...
- reconstruct_edge_feat:
reconstruct_efeat_name: "title"
target_etype:
- "user,rating,movie"
batch_size: 128
mask_fields:
- "train_mask_e0"
- "val_mask_e0"
- "test_mask_e0"
task_weight: 1.0
eval_metric:
- "mse"
In the configuration, target_etype defines the target edge type to which the reconstruct edge feature learning will be applied. reconstruct_efeat_name` defines the name of the feature to be reconstructed. The other configs are same as edge regression tasks.
Run Model Training
GraphStorm introduces a new command line graphstorm.run.gs_multi_task_learning with an additional argument –inference to run multi-task learning tasks. You can use the following command to start a multi-task training job:
python -m graphstorm.run.gs_multi_task_learning \
--workspace <PATH_TO_WORKSPACE> \
--num-trainers 1 \
--num-servers 1 \
--part-config <PATH_TO_GRAPH_DATA> \
--cf <PATH_TO_CONFIG> \
Run Model Inference
You can use the same command line graphstorm.run.gs_multi_task_learning to run inference as following:
python -m graphstorm.run.gs_multi_task_learning \
--inference \
--workspace <PATH_TO_WORKSPACE> \
--num-trainers 1 \
--num-servers 1 \
--part-config <PATH_TO_GRAPH_DATA> \
--cf <PATH_TO_CONFIG> \
--save-prediction-path <PATH_TO_OUTPUT>
The prediction results of each prediction tasks (node classification, node regression, edge classification and edge regression) will be saved into different sub-directories under PATH_TO_OUTPUT. The sub-directories are prefixed with the <task_type>_<node/edge_type>_<label_name>.
Run Model Training on SageMaker
GraphStorm supports running multi-task training on SageMaker as following:
python3 launch/launch_train.py \
--image-url <AMAZON_ECR_IMAGE_URI> \
--region <REGION> \
--entry-point run/train_entry.py \
--role <ROLE_ARN> \
--graph-data-s3 s3://<PATH_TO_DATA> \
--graph-name <GRAPH_NAME> \
--task-type multi_task \
--yaml-s3 s3://<PATH_TO_TRAINING_CONFIG> \
--model-artifact-s3 s3://<PATH_TO_SAVE_TRAINED_MODEL>/ \
--instance-count <INSTANCE_COUNT> \
--instance-type <INSTANCE_TYPE>
Run Model Inference on SageMaker
GraphStorm supports to run multi-task inference on SageMaker as following:
python3 launch/launch_infer.py \
--image-url <AMAZON_ECR_IMAGE_URI> \
--region <REGION> \
--entry-point run/infer_entry.py \
--role <ROLE_ARN> \
--graph-data-s3 s3://<PATH_TO_DATA> \
--yaml-s3 s3://<PATH_TO_TRAINING_CONFIG> \
--model-artifact-s3 s3://<PATH_TO_SAVE_TRAINED_MODEL>/ \
--raw-node-mappings-s3 s3://<PATH_TO_DATA>/raw_id_mappings \
--output-emb-s3 s3://<PATH_TO_SAVE_GENERATED_NODE_EMBEDDING>/ \
--output-prediction-s3 s3://<PATH_TO_SAVE_PREDICTION_RESULTS> \
--graph-name <GRAPH_NAME> \
--task-type multi_task \
--instance-count <INSTANCE_COUNT> \
--instance-type <INSTANCE_TYPE>
Multi-task Learning Output
Saved Node Embeddings
When save_embed_path
is provided in the training configuration or the inference configuration,
GraphStorm will save the node embeddings in the corresponding path.
In multi-task learning, by default, GraphStorm will save the node embeddings
produced by the GNN layer for every node type under the path specified by
save_embed_path
. The output format follows the GraphStorm saved node embeddings
format. Meanwhile, in multi-task learning, certain tasks might apply
task specific normalization to node embeddings. For instance, a link prediction
task might apply l2 normalization on each node embeddings. In certain cases, GraphStorm
will also save the normalized node embeddings under the save_embed_path
.
The task specific node embeddings are saved separately under different sub-directories
named with the corresponding task id. (A task id is formated as <task_type>-<ntype/etype(s)>-<label>
.
For instance, the task id of a node classification task on the node type paper
with the
label field venue
will be node_classification-paper-venue
. As another example,
the task id of a link prediction task on the edge type (paper, cite, paper)
will be
link_prediction-paper_cite_paper
and the task id of a edge regression task on the edge type (paper, cite, paper)
with
the label field year
will be edge_regression-paper_cite_paper-year
).
The output format of task specific node embeddings follows
the GraphStorm saved node embeddings format.
The contents of the save_embed_path
in multi-task learning will look like following:
emb_dir/
ntype0/
embed_nids-00000.pt
embed_nids-00001.pt
...
embed-00000.pt
embed-00001.pt
...
ntype1/
embed_nids-00000.pt
embed_nids-00001.pt
...
embed-00000.pt
embed-00001.pt
...
emb_info.json
link_prediction-paper_cite_paper/
ntype0/
embed_nids-00000.pt
embed_nids-00001.pt
...
embed-00000.pt
embed-00001.pt
...
ntype1/
embed_nids-00000.pt
embed_nids-00001.pt
...
embed-00000.pt
embed-00001.pt
...
emb_info.json
edge_regression-paper_cite_paper-year/
ntype0/
embed_nids-00000.pt
embed_nids-00001.pt
...
embed-00000.pt
embed-00001.pt
...
ntype1/
embed_nids-00000.pt
embed_nids-00001.pt
...
embed-00000.pt
embed-00001.pt
...
emb_info.json
In the above example both the link prediction and edge regression tasks apply task specific normalization on node embeddings.
Note: The built-in GraphStorm training or inference pipeline (launched by GraphStorm CLIs) will process each saved node embeddings to convert the integer node IDs into the raw node IDs, which are usually string node IDs. Details can be found in GraphStorm Output Node ID Remapping
Saved Prediction Results
When save_prediction_path
is provided in the inference configuration,
GraphStorm will save the prediction results in the corresponding path.
In multi-task learning inference, each prediction task will have its prediction
results saved separately under different sub-directories
named with the
corresponding task id. The output format of task specific prediction results
follows the GraphStorm saved prediction result format.
The contents of the save_prediction_path
in multi-task learning will look like following:
prediction_dir/
edge_regression-paper_cite_paper-year/
paper_cite_paper/
predict-00000.pt
predict-00001.pt
...
src_nids-00000.pt
src_nids-00001.pt
...
dst_nids-00000.pt
dst_nids-00001.pt
...
result_info.json
node_classification-paper-venue/
paper/
predict-00000.pt
predict-00001.pt
...
predict_nids-00000.pt
predict_nids-00001.pt
...
result_info.json
...
Note: The built-in GraphStorm inference pipeline (launched by GraphStorm CLIs) will process each saved prediction result to convert the integer node IDs into the raw node IDs, which are usually string node IDs. Details can be found in GraphStorm Output Node ID Remapping